Transcript: DPYD-AS2:1

Basic information

LNCipedia transcript ID: DPYD-AS2:1 
HGNC Gene Symbol: DPYD-AS2    
HGNC Full Gene Name: DPYD antisense RNA 2
Ensembl Gene ID: ENSG00000235777
Ensembl Transcript ID: ENST00000431362
Location (hg38): chr1:97796921-97797868
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 776 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000431362.1; DPYD-AS2-001; OTTHUMT00000095694.1; NONHSAT004720
Alternative gene names: ENSG00000235777.1; DPYD-AS2; OTTHUMG00000039680.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.5997 non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DPYD-AS2:1 yes no no no

Available literature

  1. Qian (2017), LncRNA expression profile of ΔNp63α in cervical squamous cancers and its suppressive effects on LIF expression., Cytokine


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX7-2:1
4.0 DPYD-AS2:1
4.1 DPYD-AS2:1
5.0 DPYD-AS2:1
5.1 DPYD-AS2:1
5.2 DPYD-AS2:1