Transcript: DSCAM-AS1:2

Basic information

LNCipedia transcript ID: DSCAM-AS1:2 
HGNC Gene Symbol: DSCAM-AS1    
HGNC Full Gene Name: DSCAM antisense RNA 1
Ensembl Gene ID: ENSG00000235123
Ensembl Transcript ID: ENST00000422749
Location (hg38): chr21:40383083-40385358
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1185 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422749.1; DSCAM-AS1-002; OTTHUMT00000195032.1; NONHSAT082222; ENST00000422749.5
Alternative gene names: ENSG00000235123.1; DSCAM-AS1; OTTHUMG00000086733.1; ENSG00000235123.5; M41


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.5108 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DSCAM-AS1:2 yes no no no

Available literature

  1. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget
  2. Niknafs (2016), The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression., Nat Commun
  3. Na (2015), Long non-coding RNA UCA1 contributes to the progression of prostate cancer and regulates proliferation through KLF4-KRT6/13 signaling pathway., Int J Clin Exp Med
  4. Pei (2015), Notch-1 promotes breast cancer cells proliferation by regulating LncRNA GAS5., Int J Clin Exp Med
  5. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  6. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  7. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCP4-1:3
4.0 DSCAM-AS1:2
4.1 DSCAM-AS1:2
5.0 DSCAM-AS1:2
5.1 DSCAM-AS1:2
5.2 DSCAM-AS1:2