Transcript: DSCAM-IT1:2

Basic information

LNCipedia transcript ID: DSCAM-IT1:2 
HGNC Gene Symbol: DSCAM-IT1    
HGNC Full Gene Name: DSCAM intronic transcript 1
Ensembl Gene ID: ENSG00000233756
Ensembl Transcript ID: ENST00000440363
RefSeq ID: NR_046774
Location (hg38): chr21:40618507-40630767
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 720 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000440363.1; DSCAM-IT1-001; OTTHUMT00000195023.1; NONHSAT082229; NR_046774; NR_046774.2
Alternative gene names: ENSG00000233756.1; DSCAM-IT1; OTTHUMG00000086730.1; ENSG00000233756.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.6859 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DSCAM-IT1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMPRSS2-5:2
4.0 DSCAM-IT1:2
4.1 DSCAM-IT1:2
5.0 DSCAM-IT1:2
5.1 DSCAM-IT1:2
5.2 DSCAM-IT1:2