Transcript: DSCR10:1

Basic information

LNCipedia transcript ID: DSCR10:1 
HGNC Gene Symbol: DSCR10    
HGNC Full Gene Name: Down syndrome critical region 10
Ensembl Gene ID: ENSG00000233316
Ensembl Transcript ID: ENST00000432141
RefSeq ID: NR_027695
Location (hg38): chr21:38206156-38208644
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 860 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000432141; ENST00000432141.1; DSCR10-001; OTTHUMT00000207199.1; NONHSAT082079; NR_027695; NR_027695.1
Alternative gene names: ENSG00000233316; DSCR10; ENSG00000233316.3; OTTHUMG00000090611.1; ; ENSG00000233316.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.2435 non-coding 
CPAT coding probability 5.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DSCR10:1 yes no no no

Available literature

  1. Takamatsu (2002), Identification of two novel primate-specific genes in DSCR., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DSCR8-1:1
3.1 lnc-DSCR8-1:1
4.0 DSCR10:1
4.1 DSCR10:1
5.0 DSCR10:1
5.1 DSCR10:1
5.2 DSCR10:1