Transcript: DSCR4-IT1:1

Basic information

LNCipedia transcript ID: DSCR4-IT1:1 
HGNC Gene Symbol: DSCR4-IT1    
HGNC Full Gene Name: DSCR4 intronic transcript 1
Ensembl Gene ID: ENSG00000223608
Ensembl Transcript ID: ENST00000417138
Location (hg38): chr21:38006544-38010618
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 424 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028923; ENST00000417138.1; DSCR4-IT1-001; OTTHUMT00000194833.1; NONHSAT082071
Alternative gene names: XLOC_014071; linc-KCNJ6; ENSG00000223608.1; DSCR4-IT1; OTTHUMG00000086672.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -448.5008 non-coding 
CPAT coding probability 13.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DSCR4-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNJ6-1:1
3.1 lnc-KCNJ6-1:1
4.0 DSCR4-IT1:1
4.1 DSCR4-IT1:1
5.0 DSCR4-IT1:1
5.1 DSCR4-IT1:1
5.2 DSCR4-IT1:1