Transcript: DSCR9:13

Basic information

LNCipedia transcript ID: DSCR9:13 
LNCipedia gene ID: DSCR9
Ensembl Gene ID: ENSG00000242553
Ensembl Transcript ID: ENST00000440629
Location (hg38): chr21:37221419-37237744
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 520 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440629; ENST00000440629.1; AP001432.14-001; OTTHUMT00000194798.1; NONHSAT082020
Alternative gene names: ENSG00000242553; AP001432.14; ENSG00000242553.1; OTTHUMG00000086656.1; NCRNA00038; AP001432.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.5351 non-coding 
CPAT coding probability 6.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DSCR9:13 yes no no no

Available literature

  1. Takamatsu (2002), Identification of two novel primate-specific genes in DSCR., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC3-1:7
3.1 lnc-TTC3-1:12
4.0 DSCR9:13
4.1 DSCR9:13
5.0 DSCR9:13
5.1 DSCR9:13
5.2 DSCR9:13