Transcript: DSCR9:8

Basic information

LNCipedia transcript ID: DSCR9:8 
HGNC Gene Symbol: DSCR9    
HGNC Full Gene Name: Down syndrome critical region 9
Ensembl Gene ID: ENSG00000230366
Ensembl Transcript ID: ENST00000584840
Location (hg38): chr21:37208503-37220697
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 694 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584840.1; DSCR9-004; OTTHUMT00000446078.1; NONHSAT082017; ENST00000584840.5
Alternative gene names: ENSG00000230366.5; DSCR9; OTTHUMG00000086655.2; ENSG00000230366.9; NCRNA00038


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.1006 non-coding 
CPAT coding probability 1.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DSCR9:8 no no no no

Available literature

  1. Takamatsu (2002), Identification of two novel primate-specific genes in DSCR., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TTC3-1:7
4.0 DSCR9:8
4.1 DSCR9:8
5.0 DSCR9:8
5.1 DSCR9:8
5.2 DSCR9:8