Transcript: DSCR9:9

Basic information

LNCipedia transcript ID: DSCR9:9 
HGNC Gene Symbol: DSCR9    
HGNC Full Gene Name: Down syndrome critical region 9
Ensembl Gene ID: ENSG00000230366
Ensembl Transcript ID: ENST00000454482
RefSeq ID: NR_026719
Location (hg38): chr21:37208503-37221736
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1644 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000454482.2; DSCR9-001; OTTHUMT00000194797.2; NR_026719; NR_026719.2
Alternative gene names: ENSG00000230366.5; DSCR9; OTTHUMG00000086655.2; ENSG00000230366.9; NCRNA00038


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.8462 non-coding 
CPAT coding probability 56.86% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DSCR9:9 no no no no

Available literature

  1. Takamatsu (2002), Identification of two novel primate-specific genes in DSCR., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TTC3-1:5
4.0 DSCR9:9
4.1 DSCR9:9
5.0 DSCR9:9
5.1 DSCR9:9
5.2 DSCR9:9