Transcript: DUBR:2

Basic information

LNCipedia transcript ID: DUBR:2 ?
HGNC Gene Symbol: DUBR    ?
HGNC Full Gene Name: DPPA2 upstream binding RNA
Location (hg38): chr3:107240692-107248348
Strand: +
Class: intergenic
Transcript size: 2737 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000466734; ENST00000466734.1; RP11-446H18.3-002; OTTHUMT00000353692.1; ENST00000466734.5
Alternative gene names: ENSG00000243701; RP11-446H18.3; ENSG00000243701.1; OTTHUMG00000159173.1; LINC00883; ENSG00000243701.5; DUBR;


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 1 coding ?
Highest peak:20
PhyloCSF score -140.4859 non-coding ?
CPAT coding probability 0.28% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: no

Locus conservation

Locus conservation?
DUBR:2 no no

Available literature

  1. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respiratory research


Other resources

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
3.1 lnc-CCDC54-2:4
4.1 DUBR:2
4.0 DUBR:2
1.3 lnc-CCDC54-2:1