Transcript: DUBR:25

Basic information

LNCipedia transcript ID: DUBR:25 
LNCipedia gene ID: DUBR
Location (hg38): chr3:107240718-107254766
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6418 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000243701.1|HBMT00000979440.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.3378 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DUBR:25 no no no no

Available literature

  1. Wang (2015), LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration., Cell Res.
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 DUBR:25
5.0 DUBR:25
5.1 DUBR:25
5.2 DUBR:25