Transcript: DUBR:3

Basic information

LNCipedia transcript ID: DUBR:3 
HGNC Gene Symbol: DUBR    
HGNC Full Gene Name: DPPA2 upstream binding RNA
Ensembl Gene ID: ENSG00000243701
Ensembl Transcript ID: ENST00000463143
Location (hg38): chr3:107240692-107326701
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 801 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000463143; TCONS_00005564; ENST00000463143.1; RP11-446H18.3-004; OTTHUMT00000353694.1; NONHSAT091026; ENST00000463143.5
Alternative gene names: ENSG00000243701; XLOC_002746; linc-CCDC54; RP11-446H18.3; ENSG00000243701.1; OTTHUMG00000159173.1; LINC00883; ENSG00000243701.5; DUBR;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -60.9286 non-coding 
CPAT coding probability 3.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DUBR:3 no no no no

Available literature

  1. Wang (2015), LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration., Cell Res.
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC54-2:2
3.1 lnc-CCDC54-2:2
4.0 DUBR:3
4.1 DUBR:3
5.0 DUBR:3
5.1 DUBR:3
5.2 DUBR:3