Transcript: DUBR:7

Basic information

LNCipedia transcript ID: DUBR:7 
LNCipedia gene ID: DUBR
RefSeq ID: NR_028301
Location (hg38): chr3:107240692-107248872
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3261 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT091028; NR_028301; NR_028301.1
Alternative gene names: ; DUBR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -47.8439 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DUBR:7 no no no no

Available literature

  1. Wang (2015), LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration., Cell Res.
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC54-2:14
4.0 DUBR:7
4.1 DUBR:7
5.0 DUBR:7
5.1 DUBR:7
5.2 DUBR:7