Transcript: DUBR:9

Basic information

LNCipedia transcript ID: DUBR:9 
LNCipedia gene ID: DUBR
Location (hg38): chr3:107240728-107285587
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3452 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006140; NONHSAT091031
Alternative gene names: XLOC_002746; linc-CCDC54;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -47.8439 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DUBR:9 no no no no

Available literature

  1. Wang (2015), LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration., Cell Res.
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC54-2:7
3.1 lnc-CCDC54-2:7
4.0 DUBR:9
4.1 DUBR:9
5.0 DUBR:9
5.1 DUBR:9
5.2 DUBR:9