Transcript: E2F3-IT1:2

Basic information

LNCipedia transcript ID: E2F3-IT1:2 
HGNC Gene Symbol: E2F3-IT1    
HGNC Full Gene Name: E2F3 intronic transcript 1
Ensembl Gene ID: ENSG00000224707
Ensembl Transcript ID: ENST00000433182
Location (hg38): chr6:20437821-20440178
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 400 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433182.1; E2F3-IT1-001; OTTHUMT00000039983.1; NONHSAT108026
Alternative gene names: ENSG00000224707.1; E2F3-IT1; OTTHUMG00000014337.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.096 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
E2F3-IT1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDKAL1-1:1
4.0 E2F3-IT1:2
4.1 E2F3-IT1:2
5.0 E2F3-IT1:2
5.1 E2F3-IT1:2
5.2 E2F3-IT1:2