Transcript: EDRF1-AS1:15

Basic information

LNCipedia transcript ID: EDRF1-AS1:15 
HGNC Gene Symbol: EDRF1-AS1    
HGNC Full Gene Name: EDRF1 antisense RNA 1
Ensembl Gene ID: ENSG00000236991
Ensembl Transcript ID: ENST00000449436
Location (hg38): chr10:125744727-125750466
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 505 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449436.1; RP11-383C5.7-001; OTTHUMT00000050927.1; ENST00000449436.5
Alternative gene names: ENSG00000236991.1; RP11-383C5.7; OTTHUMG00000019234.1; ENSG00000236991.2; EDRF1-AS1; ENSG00000236991.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2 non-coding 
CPAT coding probability 19.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EDRF1-AS1:15 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MMP21-1:1
4.0 EDRF1-AS1:15
4.1 EDRF1-AS1:15
5.0 EDRF1-AS1:15
5.1 EDRF1-AS1:15
5.2 EDRF1-AS1:15