Transcript: EDRF1-AS1:38

Basic information

LNCipedia transcript ID: EDRF1-AS1:38 
LNCipedia gene ID: EDRF1-AS1
Ensembl Gene ID: ENSG00000224023
Ensembl Transcript ID: ENST00000419400
Location (hg38): chr10:125700437-125707549
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00018064; ENST00000419400.1; RP11-383C5.4-001; OTTHUMT00000050918.1; NONHSAT016894
Alternative gene names: XLOC_008982; linc-C10orf122-2; ENSG00000224023.5; RP11-383C5.4; OTTHUMG00000019231.4; ENSG00000224023.6; ENSG00000224023.10; FLJ37035; ; AL158835.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -266.7464 non-coding 
CPAT coding probability 1.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EDRF1-AS1:38 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf122-1:9
3.1 lnc-C10orf122-1:14
4.0 EDRF1-AS1:38
4.1 EDRF1-AS1:38
5.0 EDRF1-AS1:38
5.1 EDRF1-AS1:38
5.2 EDRF1-AS1:38