Transcript: EGFLAM-AS1:1

Basic information

LNCipedia transcript ID: EGFLAM-AS1:1 
HGNC Gene Symbol: EGFLAM-AS1    
HGNC Full Gene Name: EGFLAM antisense RNA 1
Ensembl Gene ID: ENSG00000249491
Ensembl Transcript ID: ENST00000508986
Location (hg38): chr5:38425036-38427376
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 331 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508986.1; EGFLAM-AS1-001; OTTHUMT00000367319.1; NONHSAT101090
Alternative gene names: ENSG00000249491.1; EGFLAM-AS1; OTTHUMG00000162101.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.2998 non-coding 
CPAT coding probability 8.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EGFLAM-AS1:1 yes no no no

Available literature

  1. Wang (2018), Long non-coding RNA-CTD-2108O9.1 represses breast cancer metastasis by influencing leukemia inhibitory factor receptor., Cancer Sci.
  2. Zhao (2016), A novel long noncoding RNA-LOWEG is low expressed in gastric cancer and acts as a tumor suppressor by inhibiting cell invasion., J. Cancer Res. Clin. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIFR-2:1
4.0 EGFLAM-AS1:1
4.1 EGFLAM-AS1:1
5.0 EGFLAM-AS1:1
5.1 EGFLAM-AS1:1
5.2 EGFLAM-AS1:1