Transcript: EGFLAM-AS2:3

Basic information

LNCipedia transcript ID: EGFLAM-AS2:3 
HGNC Gene Symbol: EGFLAM-AS2    
HGNC Full Gene Name: EGFLAM antisense RNA 2
Ensembl Gene ID: ENSG00000248572
Ensembl Transcript ID: ENST00000512603
Location (hg38): chr5:38399814-38403413
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 466 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512603.1; EGFLAM-AS2-001; OTTHUMT00000367359.1; ENST00000512603.5
Alternative gene names: ENSG00000248572.1; EGFLAM-AS2; OTTHUMG00000162115.1; ENSG00000248572.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -141.0911 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EGFLAM-AS2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIFR-3:1
4.0 EGFLAM-AS2:3
4.1 EGFLAM-AS2:3
5.0 EGFLAM-AS2:3
5.1 EGFLAM-AS2:3
5.2 EGFLAM-AS2:3