Transcript: EGFLAM-AS3:1

Basic information

LNCipedia transcript ID: EGFLAM-AS3:1 
LNCipedia gene ID: EGFLAM-AS3
Location (hg38): chr5:38345344-38346551
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 552 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000505267.1; EGFLAM-AS3-001; OTTHUMT00000367340.1; NONHSAT101086
Alternative gene names: ENSG00000249071.1; EGFLAM-AS3; OTTHUMG00000162108.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -223.3197 non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EGFLAM-AS3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIFR-4:1
4.0 EGFLAM-AS3:1
4.1 EGFLAM-AS3:1
5.0 EGFLAM-AS3:1
5.1 EGFLAM-AS3:1
5.2 EGFLAM-AS3:1