Transcript: EGFR-AS1:4

Basic information

LNCipedia transcript ID: EGFR-AS1:4 
LNCipedia gene ID: EGFR-AS1
Location (hg38): chr7:55171673-55188934
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5177 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224057.1|ENCT00000411990.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 133.928 coding 
CPAT coding probability 6.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
EGFR-AS1:4 yes no no no

Available literature

  1. Tan (2017), Long noncoding RNA EGFR-AS1 mediates epidermal growth factor receptor addiction and modulates treatment response in squamous cell carcinoma., Nat. Med.
  2. Qi (2016), The long noncoding RNA, EGFR-AS1, a target of GHR, increases the expression of EGFR in hepatocellular carcinoma., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 EGFR-AS1:4
5.0 EGFR-AS1:4
5.1 EGFR-AS1:4
5.2 EGFR-AS1:4