Transcript: EGOT:2

Basic information

LNCipedia transcript ID: EGOT:2 
HGNC Gene Symbol: EGOT    
HGNC Full Gene Name: eosinophil granule ontogeny transcript
Ensembl Gene ID: ENSG00000235947
Ensembl Transcript ID: ENST00000414938
RefSeq ID: NR_004428
Location (hg38): chr3:4749192-4751590
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1464 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000414938; ENST00000414938.1; EGOT-001; OTTHUMT00000343583.2; NONHSAT087635; NR_004428.1
Alternative gene names: ENSG00000235947; EGOT; ENSG00000235947.1; OTTHUMG00000156235.2; EGO; NCRNA00190


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.7467 non-coding 
CPAT coding probability 10.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EGOT:2 yes no no no

Available literature

  1. Xu (2015), Downregulation of the long noncoding RNA EGOT correlates with malignant status and poor prognosis in breast cancer., Tumour Biol.
  2. Du (2013), Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer., Nat. Struct. Mol. Biol.
  3. Rose (2011), Molecular evolution of the non-coding eosinophil granule ontogeny transcript., Front Genet
  4. Wagner (2007), EGO, a novel, noncoding RNA gene, regulates eosinophil granule protein transcript expression., Blood


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC018816.3.1-2:1
3.1 lnc-AC018816.3.1-2:1
4.0 EGOT:2
4.1 EGOT:2
5.0 EGOT:2
5.1 EGOT:2
5.2 EGOT:2