Transcript: EHHADH-AS1:2

Basic information

LNCipedia transcript ID: EHHADH-AS1:2 
HGNC Gene Symbol: EHHADH-AS1    
HGNC Full Gene Name: EHHADH antisense RNA 1
Ensembl Gene ID: ENSG00000223358
Ensembl Transcript ID: ENST00000417720
RefSeq ID: NR_038990
Location (hg38): chr3:185162901-185191955
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1416 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000417720.1; RP11-29A1.3-001; OTTHUMT00000345324.1; NONHSAT093757; NR_038990; NR_038990.1
Alternative gene names: ENSG00000223358.1; RP11-29A1.3; OTTHUMG00000156697.1; EHHADH-AS1; ENSG00000223358.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.9753 non-coding 
CPAT coding probability 26.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EHHADH-AS1:2 no no no no

Available literature

  1. Xiong (2015), Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP3K13-1:2
4.0 EHHADH-AS1:2
4.1 EHHADH-AS1:2
5.0 EHHADH-AS1:2
5.1 EHHADH-AS1:2
5.2 EHHADH-AS1:2