Transcript: EMX2OS:12

Basic information

LNCipedia transcript ID: EMX2OS:12 
LNCipedia gene ID: EMX2OS
Location (hg38): chr10:117473215-117486198
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 454 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000424371.1; EMX2OS-004; OTTHUMT00000050574.1
Alternative gene names: ENSG00000229847.2; EMX2OS; OTTHUMG00000019125.2; NCRNA00045; EMX2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.2087 non-coding 
CPAT coding probability 18.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EMX2OS:12 no no no no

Available literature

  1. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  2. Michelhaugh (2011), Mining Affymetrix microarray data for long non-coding RNAs: altered expression in the nucleus accumbens of heroin abusers., J. Neurochem.
  3. Spigoni (2010), Regulation of Emx2 expression by antisense transcripts in murine cortico-cerebral precursors., PLoS ONE
  4. Noonan (2003), Antisense transcripts at the EMX2 locus in human and mouse., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDZD8-2:5
4.0 EMX2OS:12
4.1 EMX2OS:12
5.0 EMX2OS:12
5.1 EMX2OS:12
5.2 EMX2OS:12