Transcript: EP300-AS1:19

Basic information

LNCipedia transcript ID: EP300-AS1:19 
LNCipedia gene ID: EP300-AS1
Ensembl Gene ID: ENSG00000232754
Ensembl Transcript ID: ENST00000415054
Location (hg38): chr22:41169190-41183144
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 357 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415054.1; RP1-85F18.6-001; OTTHUMT00000320602.1; NONHSAT086887
Alternative gene names: ENSG00000232754.1; RP1-85F18.6; OTTHUMG00000150939.1; ; AL035658.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.7508 non-coding 
CPAT coding probability 2.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EP300-AS1:19 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHADL-3:1
4.0 lnc-CHADL-3:1
4.1 EP300-AS1:19
5.0 EP300-AS1:19
5.1 EP300-AS1:19
5.2 EP300-AS1:19