Transcript: EPHA1-AS1:3

Basic information

LNCipedia transcript ID: EPHA1-AS1:3 
HGNC Gene Symbol: EPHA1-AS1    
HGNC Full Gene Name: EPHA1 antisense RNA 1
Ensembl Gene ID: ENSG00000229153
Ensembl Transcript ID: ENST00000421648
Location (hg38): chr7:143407833-143415830
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 484 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421648; ENST00000421648.1; AC092214.10-002; OTTHUMT00000342150.1; NONHSAT123873
Alternative gene names: ENSG00000229153; AC092214.10; ENSG00000229153.1; OTTHUMG00000155893.1; EPHA1-AS1; ENSG00000229153.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -198.8523 non-coding 
CPAT coding probability 20.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EPHA1-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZYX-1:2
3.1 lnc-ZYX-1:2
4.0 EPHA1-AS1:3
4.1 EPHA1-AS1:3
5.0 EPHA1-AS1:3
5.1 EPHA1-AS1:3
5.2 EPHA1-AS1:3