Transcript: ERC2-IT1:1

Basic information

LNCipedia transcript ID: ERC2-IT1:1 
LNCipedia gene ID: ERC2-IT1
Location (hg38): chr3:55657215-55659469
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2255 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT090039; NR_024615
Alternative gene names: Po42


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.1035 non-coding 
CPAT coding probability 21.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ERC2-IT1:1 yes no no no

Available literature

  1. Onyango (1998), Molecular cloning and expression analysis of five novel genes in chromosome 1p36., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WNT5A-4:1
4.0 ERC2-IT1:1
4.1 ERC2-IT1:1
5.0 ERC2-IT1:1
5.1 ERC2-IT1:1
5.2 ERC2-IT1:1