Transcript: ERC2-IT1:2

Basic information

LNCipedia transcript ID: ERC2-IT1:2 
LNCipedia gene ID: ERC2-IT1
Ensembl Gene ID: ENSG00000281708
Ensembl Transcript ID: ENST00000629461
Location (hg38): chr3:55657206-55659382
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2177 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000629461.1
Alternative gene names: ENSG00000281708.1; ERC2-IT1; Po42


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -49.1035 non-coding 
CPAT coding probability 21.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ERC2-IT1:2 yes no no no

Available literature

  1. Onyango (1998), Molecular cloning and expression analysis of five novel genes in chromosome 1p36., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 ERC2-IT1:2
4.1 ERC2-IT1:2
5.0 ERC2-IT1:2
5.1 ERC2-IT1:2
5.2 ERC2-IT1:2