Transcript: ERI3-IT1:6

Basic information

LNCipedia transcript ID: ERI3-IT1:6 
HGNC Gene Symbol: ERI3-IT1    
HGNC Full Gene Name: ERI3 intronic transcript 1
Ensembl Gene ID: ENSG00000233602
Ensembl Transcript ID: ENST00000414156
Location (hg38): chr1:44243408-44244273
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 619 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414156.1; ERI3-IT1-001; OTTHUMT00000090773.1; NONHSAT002872
Alternative gene names: ENSG00000233602.1; ERI3-IT1; OTTHUMG00000037293.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -213.6477 non-coding 
CPAT coding probability 4.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ERI3-IT1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC6A9-4:1
4.0 ERI3-IT1:6
4.1 ERI3-IT1:6
5.0 ERI3-IT1:6
5.1 ERI3-IT1:6
5.2 ERI3-IT1:6