Transcript: EWSAT1:11

Basic information

LNCipedia transcript ID: EWSAT1:11 
LNCipedia gene ID: EWSAT1
Location (hg38): chr15:69080879-69099935
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 864 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000559870.1; RP11-809H16.5-001; OTTHUMT00000416781.1; NONHSAT046921
Alternative gene names: ENSG00000259222.1; RP11-809H16.5; OTTHUMG00000172082.1; FLJ33768


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.9133 non-coding 
CPAT coding probability 2.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EWSAT1:11 no no no no

Available literature

  1. Song (2016), Long non-coding RNA EWSAT1 promotes human nasopharyngeal carcinoma cell growth in vitro by targeting miR-326/-330-5p., Aging (Albany NY)
  2. Sun (2016), Long Noncoding RNA EWSAT1 Promotes Osteosarcoma Cell Growth and Metastasis Through Suppression of MEG3 Expression., DNA Cell Biol.
  3. Marques Howarth (2014), Long noncoding RNA EWSAT1-mediated gene repression facilitates Ewing sarcoma oncogenesis., J. Clin. Invest.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-809H16.2.1-2:9
4.0 EWSAT1:11
4.1 EWSAT1:11
5.0 EWSAT1:11
5.1 EWSAT1:11
5.2 EWSAT1:11