Transcript: EXTL3-AS1:16

Basic information

LNCipedia transcript ID: EXTL3-AS1:16 
LNCipedia gene ID: EXTL3-AS1
Location (hg38): chr8:28690240-28701411
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3955 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000246339.4|ENCT00000433916.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.4703 non-coding 
CPAT coding probability 10.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EXTL3-AS1:16 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 EXTL3-AS1:16
5.0 EXTL3-AS1:16
5.1 EXTL3-AS1:16
5.2 EXTL3-AS1:16