Transcript: EXTL3-AS1:2

Basic information

LNCipedia transcript ID: EXTL3-AS1:2 
HGNC Gene Symbol: EXTL3-AS1    
HGNC Full Gene Name: EXTL3 antisense RNA 1
Ensembl Gene ID: ENSG00000246339
Ensembl Transcript ID: ENST00000520023
RefSeq ID: NR_126027
Location (hg38): chr8:28698403-28701464
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 780 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000520023; ENST00000520023.1; EXTL3-AS1-001; OTTHUMT00000376843.1; NONHSAT125753; NR_126027; NR_126027.1
Alternative gene names: ENSG00000246339; CTD-2172A10.1; ENSG00000246339.3; EXTL3-AS1; OTTHUMG00000164029.1; ENSG00000246339.4; ENSG00000246339.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.497 non-coding 
CPAT coding probability 2.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EXTL3-AS1:2 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-INTS9-1:1
3.1 lnc-INTS9-1:1
4.0 EXTL3-AS1:2
4.1 EXTL3-AS1:2
5.0 EXTL3-AS1:2
5.1 EXTL3-AS1:2
5.2 EXTL3-AS1:2