Transcript: EXTL3-AS1:5

Basic information

LNCipedia transcript ID: EXTL3-AS1:5 
LNCipedia gene ID: EXTL3-AS1
Location (hg38): chr8:28696201-28701319
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3688 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000501224; ENST00000501224.2; EXTL3-AS1-003; OTTHUMT00000376841.1; NONHSAT125751
Alternative gene names: ENSG00000246339; CTD-2172A10.1; ENSG00000246339.3; EXTL3-AS1; OTTHUMG00000164029.1; ENSG00000246339.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.3696 non-coding 
CPAT coding probability 3.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EXTL3-AS1:5 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-INTS9-1:4
3.1 lnc-INTS9-1:4
4.0 EXTL3-AS1:5
4.1 EXTL3-AS1:5
5.0 EXTL3-AS1:5
5.1 EXTL3-AS1:5
5.2 EXTL3-AS1:5