Transcript: EXTL3-AS1:7

Basic information

LNCipedia transcript ID: EXTL3-AS1:7 
HGNC Gene Symbol: EXTL3-AS1    
HGNC Full Gene Name: EXTL3 antisense RNA 1
Ensembl Gene ID: ENSG00000246339
Ensembl Transcript ID: ENST00000501224
Location (hg38): chr8:28696198-28701319
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3691 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501224.3
Alternative gene names: ENSG00000246339.5; EXTL3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.3696 non-coding 
CPAT coding probability 3.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EXTL3-AS1:7 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 EXTL3-AS1:7
4.1 EXTL3-AS1:7
5.0 EXTL3-AS1:7
5.1 EXTL3-AS1:7
5.2 EXTL3-AS1:7