Transcript: FALEC:2

Basic information

LNCipedia transcript ID: FALEC:2 
HGNC Gene Symbol: FALEC    
HGNC Full Gene Name: focally amplified long non-coding RNA in epithelial cancer
Ensembl Gene ID: ENSG00000228126
Ensembl Transcript ID: ENST00000416894
RefSeq ID: NR_051960
Location (hg38): chr1:150515757-150518032
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; long non-coding rna db - lncrnadb.com; Ensembl release 83 - Dec 2015; Ensembl release 75 - Feb 2014; NONCODE v4; Refseq - Dec 2014; Ensembl release 64 - Sep 2011; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_051960; LINC00568-001; ENST00000416894.1; ENST00000416894; NONHSAT006301; LINC00568; OTTHUMT00000087261.1; NR_051960.1
Alternative gene names: Noncoding RNA activating1: ncRNA-a1; FALEC; OTTHUMG00000035849.1; ENSG00000228126.1; LINC00568; ENSG00000228126; RP11-54A4.8; ncRNA-a1; FAL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.6512 non-coding 
CPAT coding probability 5.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FALEC:2 no no no no

Available literature

  1. Hu (2014), A functional genomic approach identifies FAL1 as an oncogenic long noncoding RNA that associates with BMI1 and represses p21 expression in cancer., Cancer Cell
  2. Ørom (2010), Long noncoding RNAs with enhancer-like function in human cells., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ECM1-1:1
3.1 lnc-ECM1-1:1
4.0 FALEC:2
4.1 FALEC:2
5.0 FALEC:2
5.1 FALEC:2
5.2 FALEC:2