Transcript: FALEC:3

Basic information

LNCipedia transcript ID: FALEC:3 
LNCipedia gene ID: FALEC
Location (hg38): chr1:150515752-150518032
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000228126.1|ENST00000416894.1
Alternative gene names: ncRNA-a1; FAL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.6512 non-coding 
CPAT coding probability 2.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FALEC:3 no no no no

Available literature

  1. Hu (2014), A functional genomic approach identifies FAL1 as an oncogenic long noncoding RNA that associates with BMI1 and represses p21 expression in cancer., Cancer Cell
  2. Ørom (2010), Long noncoding RNAs with enhancer-like function in human cells., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 FALEC:3
5.0 FALEC:3
5.1 FALEC:3
5.2 FALEC:3