Transcript: FAM111A-DT:19

Basic information

LNCipedia transcript ID: FAM111A-DT:19 
HGNC Gene Symbol: FAM111A-DT    
HGNC Full Gene Name: FAM111A divergent transcript
Ensembl Gene ID: ENSG00000245571
Ensembl Transcript ID: ENST00000531708
Location (hg38): chr11:59135290-59143015
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 880 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531708; ENST00000531708.1; AP001258.4-004; OTTHUMT00000394607.1; NONHSAT021506
Alternative gene names: ENSG00000245571; AP001258.4; ENSG00000245571.2; OTTHUMG00000167435.1; ENSG00000245571.6; AP001258.1; FAM111A-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.2854 non-coding 
CPAT coding probability 4.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM111A-DT:19 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MPEG1-2:1
3.1 lnc-MPEG1-2:1
4.0 lnc-MPEG1-2:1
4.1 lnc-MPEG1-2:1
5.0 lnc-MPEG1-2:1
5.1 FAM111A-DT:2
5.2 FAM111A-DT:19