Transcript: FAM111A-DT:27

Basic information

LNCipedia transcript ID: FAM111A-DT:27 
HGNC Gene Symbol: FAM111A-DT    
HGNC Full Gene Name: FAM111A divergent transcript
Ensembl Gene ID: ENSG00000245571
Ensembl Transcript ID: ENST00000533220
Location (hg38): chr11:59139715-59142771
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 534 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533220; ENST00000533220.1; AP001258.4-002; OTTHUMT00000394609.1; NONHSAT021508
Alternative gene names: ENSG00000245571; AP001258.4; ENSG00000245571.2; OTTHUMG00000167435.1; ENSG00000245571.6; AP001258.1; FAM111A-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.3521 non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM111A-DT:27 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MPEG1-2:2
3.1 lnc-MPEG1-2:2
4.0 lnc-MPEG1-2:2
4.1 lnc-MPEG1-2:2
5.0 lnc-MPEG1-2:2
5.1 FAM111A-DT:11
5.2 FAM111A-DT:27