Transcript: FAM138D:1

Basic information

LNCipedia transcript ID: FAM138D:1 
HGNC Gene Symbol: FAM138D    
HGNC Full Gene Name: family with sequence similarity 138 member D
Ensembl Gene ID: ENSG00000249054
Ensembl Transcript ID: ENST00000504074
Location (hg38): chr12:36602-38133
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1187 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504074; ENST00000504074.1; RP11-598F7.1-001; OTTHUMT00000397330.1; NONHSAT025290
Alternative gene names: ENSG00000249054; AC215219.2; ENSG00000249054.2; RP11-598F7.1; OTTHUMG00000167962.2; FAM138D; F379


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9779 non-coding 
CPAT coding probability 3.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM138D:1 no no no no

Available literature

  1. Wong (2004), Diverse fates of paralogs following segmental duplication of telomeric genes., Genomics
  2. Mah (2001), Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IQSEC3-1:1
3.1 lnc-IQSEC3-3:1
4.0 FAM138D:1
4.1 FAM138D:1
5.0 FAM138D:1
5.1 FAM138D:1
5.2 FAM138D:1