Transcript: FAM138D:2

Basic information

LNCipedia transcript ID: FAM138D:2 
LNCipedia gene ID: FAM138D
RefSeq ID: NR_026823
Location (hg38): chr12:36661-38133
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1126 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026823; NR_026823.2
Alternative gene names: F379; FAM138D


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -15.9779 non-coding 
CPAT coding probability 17.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM138D:2 no no no no

Available literature

  1. Wong (2004), Diverse fates of paralogs following segmental duplication of telomeric genes., Genomics
  2. Mah (2001), Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IQSEC3-3:4
4.0 FAM138D:2
4.1 FAM138D:2
5.0 FAM138D:2
5.1 FAM138D:2
5.2 FAM138D:2