Transcript: FAM138F:3

Basic information

LNCipedia transcript ID: FAM138F:3 
LNCipedia gene ID: FAM138F
RefSeq ID: NR_026820
Location (hg38): chr19:76220-77690
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1130 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026818; NR_026820; ENST00000448235.4; NR_026820.1
Alternative gene names: ENSG00000233630.4; FAM138F; F379


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.3395 non-coding 
CPAT coding probability 5.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM138F:3 no no no no

Available literature

  1. Wong (2004), Diverse fates of paralogs following segmental duplication of telomeric genes., Genomics
  2. Mah (2001), Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM138F-1:2
4.0 FAM138F:3
4.1 FAM138F:3
5.0 FAM138F:3
5.1 FAM138F:3
5.2 FAM138F:3