Transcript: FAM160A1-DT:28

Basic information

LNCipedia transcript ID: FAM160A1-DT:28 
LNCipedia gene ID: FAM160A1-DT
Location (hg38): chr4:151405462-151407769
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 428 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008621; NONHSAT098756
Alternative gene names: XLOC_004122; linc-SH3D19


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.0208 non-coding 
CPAT coding probability 1.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM160A1-DT:28 no no no no

Available literature

  1. Zeng (2017), Comprehensive investigation of a novel differentially expressed lncRNA expression profile signature to assess the survival of patients with colorectal adenocarcinoma., Oncotarget
  2. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.
  3. Zhu (2015), Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection., BMC Med Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SH3D19-1:4
3.1 lnc-SH3D19-1:4
4.0 lnc-SH3D19-1:4
4.1 lnc-SH3D19-1:4
5.0 lnc-SH3D19-1:4
5.1 FAM160A1-DT:14
5.2 FAM160A1-DT:28