Transcript: FAM198B-AS1:23

Basic information

LNCipedia transcript ID: FAM198B-AS1:23 
HGNC Gene Symbol: FAM198B-AS1    
HGNC Full Gene Name: FAM198B antisense RNA 1
Ensembl Gene ID: ENSG00000248429
Ensembl Transcript ID: ENST00000514381
Location (hg38): chr4:158172577-158179926
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 762 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514381.1; RP11-597D13.9-003; OTTHUMT00000365619.1; NONHSAT098987
Alternative gene names: ENSG00000248429.1; RP11-597D13.9; OTTHUMG00000161654.6; ENSG00000248429.5; AC098679.1; FAM198B-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.4437 non-coding 
CPAT coding probability 2.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM198B-AS1:23 no no no no

Available literature

  1. Wang (2016), LncRNAs expression profiling in normal ovary, benign ovarian cyst and malignant epithelial ovarian cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM144-1:4
4.0 lnc-TMEM144-1:4
4.1 lnc-TMEM144-1:4
5.0 lnc-TMEM144-1:4
5.1 FAM198B-AS1:14
5.2 FAM198B-AS1:23