Transcript: FAM222A-AS1:3

Basic information

LNCipedia transcript ID: FAM222A-AS1:3 
LNCipedia gene ID: FAM222A-AS1
RefSeq ID: NR_026661
Location (hg38): chr12:109734209-109773487
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 868 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT140093; NR_026661; NR_026661.2
Alternative gene names: ; FAM222A-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.019 non-coding 
CPAT coding probability 32.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM222A-AS1:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPV4-1:5
4.0 FAM222A-AS1:3
4.1 FAM222A-AS1:3
5.0 FAM222A-AS1:3
5.1 FAM222A-AS1:3
5.2 FAM222A-AS1:3