Transcript: FAM238C:10

Basic information

LNCipedia transcript ID: FAM238C:10 
LNCipedia gene ID: FAM238C
Location (hg38): chr10:26943323-26944418
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 645 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000433966; ENST00000433966.1; LINC00614-001; OTTHUMT00000047295.1; NONHSAT011872
Alternative gene names: ENSG00000236983; C10orf52; ENSG00000236983.1; LINC00614; OTTHUMG00000017850.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 66.604 coding 
CPAT coding probability 11.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FAM238C:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD26-2:1
3.1 lnc-ANKRD26-2:1
4.0 lnc-ANKRD26-3:7
4.1 lnc-ANKRD26-3:7
5.0 lnc-ANKRD26-3:7
5.1 FAM238C:3
5.2 FAM238C:10