Transcript: FAM238C:13

Basic information

LNCipedia transcript ID: FAM238C:13 
LNCipedia gene ID: FAM238C
Location (hg38): chr10:26931206-26937859
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1787 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000458084; ENST00000458084.1; LINC00202-001; OTTHUMT00000047292.1; NONHSAT011866; ENST00000458084.5
Alternative gene names: ENSG00000232224; NCRNA00202; ENSG00000232224.1; LINC00202; OTTHUMG00000017849.1; LINC00202-1; ENSG00000232224.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.1053 non-coding 
CPAT coding probability 40.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FAM238C:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD26-3:2
3.1 lnc-ANKRD26-3:2
4.0 lnc-ANKRD26-3:2
4.1 lnc-ANKRD26-3:2
5.0 lnc-ANKRD26-3:2
5.1 FAM238C:6
5.2 FAM238C:13