Transcript: FAM238C:15

Basic information

LNCipedia transcript ID: FAM238C:15 
LNCipedia gene ID: FAM238C
Location (hg38): chr10:26931206-26934923
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 868 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000458682; ENST00000458682.1; LINC00202-003; OTTHUMT00000047294.1; NONHSAT011867; ENST00000458682.5
Alternative gene names: ENSG00000232224; NCRNA00202; ENSG00000232224.1; LINC00202; OTTHUMG00000017849.1; LINC00202-1; ENSG00000232224.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.1538 non-coding 
CPAT coding probability 41.21% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FAM238C:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD26-3:3
3.1 lnc-ANKRD26-3:3
4.0 lnc-ANKRD26-3:3
4.1 lnc-ANKRD26-3:3
5.0 lnc-ANKRD26-3:3
5.1 FAM238C:8
5.2 FAM238C:15