Transcript: FAM242A:10

Basic information

LNCipedia transcript ID: FAM242A:10 
HGNC Gene Symbol: FAM242A    
HGNC Full Gene Name: family with sequence similarity 242 member A
Ensembl Gene ID: ENSG00000231934
Ensembl Transcript ID: ENST00000432067
Location (hg38): chr20:30331080-30361730
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 460 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000432067.1; RP4-610C12.1-002; OTTHUMT00000078489.3; NONHSAT079272
Alternative gene names: ENSG00000231934.1; RP4-610C12.1; OTTHUMG00000032154.3; LINC01598; TCONS_00028363


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.8176 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM242A:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DEFB116-1:1
4.0 LINC01598:3
4.1 LINC01598:3
5.0 LINC01598:3
5.1 FAM242A:4
5.2 FAM242A:10