Transcript: FAM242C:11

Basic information

LNCipedia transcript ID: FAM242C:11 
LNCipedia gene ID: FAM242C
Location (hg38): chr12:54110182-54121655
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 391 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT028575
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.2942 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM242C:11 yes no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMUG1-3:5
4.0 lnc-SMUG1-3:5
4.1 lnc-SMUG1-3:5
5.0 lnc-SMUG1-3:5
5.1 FAM242C:6
5.2 FAM242C:11