Transcript: FAM242C:9

Basic information

LNCipedia transcript ID: FAM242C:9 
HGNC Gene Symbol: FAM242C    
HGNC Full Gene Name: family with sequence similarity 242 member C
Ensembl Gene ID: ENSG00000250432
Ensembl Transcript ID: ENST00000508763
Location (hg38): chr12:54114013-54125891
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 719 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508763; ENST00000508763.1; RP11-834C11.5-001; OTTHUMT00000358939.1; NONHSAT028576
Alternative gene names: ENSG00000250432; RP11-834C11.5; ENSG00000250432.1; OTTHUMG00000160026.1; ENSG00000250432.5; LINC01598; AC023794.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -185.2749 non-coding 
CPAT coding probability 2.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM242C:9 yes no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SMUG1-2:3
3.1 lnc-SMUG1-3:3
4.0 lnc-SMUG1-3:3
4.1 lnc-SMUG1-3:3
5.0 lnc-SMUG1-3:3
5.1 FAM242C:4
5.2 FAM242C:9