Transcript: FAM41AY1:5

Basic information

LNCipedia transcript ID: FAM41AY1:5 
LNCipedia gene ID: FAM41AY1
Location (hg38): chrY:17500958-17516741
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2042 bp
Exons: 10
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000421205; ENST00000421205.1; FAM41AY1-001; OTTHUMT00000100026.1
Alternative gene names: ENSG00000224989; FAM41AY1; ENSG00000224989.1; OTTHUMG00000041970.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.3454 non-coding 
CPAT coding probability 10.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM41AY1:5 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDY2A-1:1
3.1 lnc-CDY2A-1:1
4.0 lnc-CDY2A-1:1
4.1 lnc-CDY2A-1:1
5.0 lnc-CDY2A-1:1
5.1 FAM41AY1:2
5.2 FAM41AY1:5